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Baek, M, Virgilio, S, Lamb TM, Ibarra, O, Andrade, JM, Goncalves, RD, Dovzhenok, A, Lim, S, Bell-Pedersen, D, Bertolini, MC, Hong, CI. 2019. Circadian clock regulation of the glycogen synthase (gsn) gene by WCC is critical for rhythmic glycogen metabolism in Neurospora crassa.  PNAS USA 116: 10435-10440.

Goldsmith, CS, Kim, SM, Karunarathna, N., Farnell, Y, Neuendorff, N, Toussaint, LG, Earnest, DE, and Bell-Pedersen, D. (2018) Inhibition of p38 MAPK activity leads to cell type-specific effects on the molecular circadian clock and time-dependent reduction of glioma cell invasiveness. BMC Cancer 18: 43. 

Wu, C., Dasgupta, A., Shen, L., Bell-Pedersen, D., Sachs, M (2018) The cell fee protein synthesis system from the model filamentous fungus Neurospora crassa. Methods S1046-2023

Hughes ME, Allada R, Anafi R,  Arpat AB, Asher G, Baldi P, de Bekker C, Bell-Pedersen, D, Blau J, Brown S, Ceriani MF, Chen Z, Chiu J, Cox J, Crowell AM, Dijk DJ, DiTacchio L, Duffield GE, Dunlap JC, Eckel-Mahan K, Esser KA, Gachon F, Gatfield D, de Goede P, Golden SS, Green C, Harer J, Harmer S, Haspel J, Hastings MH,  Herzel H, Herzog ED, Hoffmann C, Hong C, Hughey JJ, Hurley JM, Johnson C, Kay SA, Koike N, Kornacker K, Kramer A, Lamia K, Leise T, Lewis SA, Li J, Li X, Liu AC, Loros JJ, Martino TA, Menet JS, Merrow M, Millar AJ, Mockler T, Naef F, Nagoshi E, Nitabach MN, Olmedo M, Nusinow DA, Rand D, Reddy AB, Robles MS, Roenneberg T, Rosbash M, Rund SSC, Sassone-Corsi P, Sehgal A, Sherrill-Mix S,  Skene DJ, Storch KF, Takahashi JS, Ueda HR, Weitz C, Westermark P, Wijnen H, Wu G, Yoo SH, Young M, Zielinski T, Hogenesch, JB. (2017) Guidelines for genome-scale analysis of biological rhythms. J Biol Rhythms 32:380-393

Ivanov I, Wei J, Caster S, Smith K, Michel A, Zhang Y, Firth A, Freitag M, Dunlap J, Bell-Pedersen D, Atkins A, and Sachs M (2017) Translation initiation from conserved non-AUG codons provides additional layers of regulation and coding capacity. MBio 8: 844-817.

Dekhang, R, Wu, C, Smith, KM, Lamb TM, Petersen, M., Bredeweg, E, Ibarra O, Emerson, JM, Karunarathna, N, Lyubetskaya A, Azizi, E, Hurley, JM, Dunlap, JC, Galagan, J, Freitag, M, Sachs, MS,  and Bell-Pedersen, D. (2017) The Neurospora transcription factory ADV-1 transduces light signals and temporal information to control rhythmic expression of genes involved in cell-fusion. G3 7:129-142

Caster, SZ, Castillo, K, Sachs MS, Bell-Pedersen, D. (2016) Circadian clock regulation of mRNA transaltion through eukaryotic elongation factor eEF-2. Proc. Natl. Acad. Sci USA. 113: 9605-9610.

Nsa I, Karunarathna, N, Liu, X, Huang, H, Boetteger, B, and Bell-Pedersen, D. (2015) A novel cryptochrome-dependent oscillator in Neurospora crassa. Genetics 199: 233-245

Hurley JM, Dasgupta A, Emerson JM, Zhou X, Ringelberg CS, Knabe N, Lipzen A, Lindquist E, Daum C, Barry K, Grigoriev IV, Smith K, Galagan J, Bell-Pedersen D, Freitag M, Cheng C, Loros J, Dunlap JC (2014) Analysis of clock regulated genes in Neurospora reveals widespread post-transcriptional control of metabolic potential. Proc. Natl. Acad. Sci USA 111: 16995-17002

Wu, C, Yang, F, Smith KM, Petersen M, Dekhang R, Zhang Y, Zucker, J, Bredeweg, EL, Mallappa, C, Zhou X, Townsend, JP, Galagan, JE, Freitag, M. Dunlap, JC, Bell-Pedersen, D, Sachs, MS. (2014) Genome-wide characterization of light-regulated genes in Neurospora crassa. G3 4: 1731-1745.

Goldsmith, CS and Bell-Pedersen, D. (2013) Diverse roles for MAPK signaling in circadian clocks. Adv. Genet. 84: 1-39 PMID 24262095

Lamb, TM, and Bell-Pedersen, D. (2013). Regulation of gene expression in Neurospora crassa with a copper responsive promoter. G3. 3: 2273-2280 PMCID: PMC3852388

Bennett, LD, Beremand, P, Thomas TL, and Bell-Pedersen, D (2013) Circadian activation     of the mitogen-activated protein kinase MAK-1 facilitates rhythms in clock-controlled genes in Neurospora crassa. Euk Cell 12:59-69. PMCID: PMC3535850

Lamb, TM, Finch, KE, and Bell-Pedersen, D. (2012) The Neurospora crassa OS MAPK pathway-activated transcription factor ASL-1 functions to generate circadian rhythms In pathway responsive clock-controlled genes. Fungal Genet Biol. 49(2):180-18.

Lakin-Thomas PL, Bell-Pedersen D, Brody S. (2011) The genetics of circadian rhythms in Neurospora. Adv Genet. 2011;74:55-103

Lamb TM, Goldsmith CS, Bennett L, Finch KE, Bell-Pedersen D. (2011) Direct Transcriptional Control of a p38 MAPK Pathway by the Circadian Clock in Neurospora crassa. PLoS One. 6(11):e27149. 

Smith, K.M., Sancar, G., Dekhang, R., Sullivan, C.M., Li, S., Bredeweg, E.L., Priest, H., McCormick, R.F., Tag, A., Thomas, T., Sancar, C., Carrington, J.C., Bell-Pedersen, D., Brunner, M., Stajich, J.E., Freitag, M. (2010) Transcription factors in light and circadian clock signaling networks revealed by genomewide mapping of direct targets for Neurospora white collar complex. Euk Cell 9: 1549-1556.

Vitalini, M.W., Dunlap, J.C., Heintzen, C., Liu, Y., Loros, J.J., and Bell-Pedersen (2010) Circadian Rhythms. In Cellular and Molecular Biology of Filamentous Fungi. Borkovich and Ebbole, Eds. ASM press. P442-466.

To view all of our publications, please see 

https://www.ncbi.nlm.nih.gov/sites/myncbi/deborah.bell-ˇ

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